Pairwise fitting pdb-1x18 on emdb-6050 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-6050 by gmfit(PID:3783465).





RANK[1] Corr.Coeff:0.520

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-6050)

display:



color:


Cryo-EM structure of the yeast dynein motor domain in the presence of ADP-vanadate [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.520
0.511
0.479
0.467
0.453
0.441
0.411
0.391
0.372
0.331







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6050.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.367002,0.926543,0.082629 155.558402 center 0,0,0 model #1
move 66.447863,35.712535,128.753055 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!