Pairwise fitting pdb-1x18 on emdb-6020 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-6020 by gmfit(PID:3674996).





RANK[1] Corr.Coeff:0.621

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-6020)

display:



color:


Conformational Spectrum of Multidrug ABC Transporters Revealed by Single Particle Electron Microscopy [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.621
0.569
0.551
0.541
0.507
0.495
0.494
0.489
0.488
0.485







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6020.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.180902,0.230079,-0.956210 125.739611 center 0,0,0 model #1
move -44.539703,-16.023663,-80.239611 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!