Pairwise fitting pdb-1x18 on emdb-5925 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-5925 by gmfit(PID:1610000).





RANK[1] Corr.Coeff:0.466

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-5925)

display:



color:


3.6 Angstrom resolution MAVS filament generated from helical reconstruction, truncated map [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.466
0.465
0.451
0.441
0.422
0.417
0.413
0.404
0.395
0.386







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5925.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.487625,-0.586862,-0.646386 64.697235 center 0,0,0 model #1
move 86.521474,-25.786545,59.750199 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!