Pairwise fitting pdb-1x18 on emdb-5815 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-5815 by gmfit(PID:599209).





RANK[1] Corr.Coeff:0.659

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-5815)

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Negative-stain electron microscopy reconstruction of Tetrahymena telomerase (Teb1-f, conformation X) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.659
0.646
0.645
0.606
0.564
0.557
0.534
0.511
0.463
0.430







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5815.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.037309,-0.998631,-0.036672 168.232295 center 0,0,0 model #1
move -48.380136,-29.786378,66.431943 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!