Pairwise fitting pdb-1x18 on emdb-3460 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-3460 by gmfit(PID:2310983).





RANK[1] Corr.Coeff:0.539

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-3460)

display:



color:


Cryo-EM structure of Lambda Phage protein GamS bound to RecBCD. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.539
0.509
0.500
0.497
0.492
0.471
0.468
0.454
0.449
0.445







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3460.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.708616,-0.690111,0.147004 176.454034 center 0,0,0 model #1
move 130.556492,65.980379,194.275797 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!