Pairwise fitting pdb-1x18 on emdb-3238 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-3238 by gmfit(PID:2311974).





RANK[1] Corr.Coeff:0.567

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-3238)

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color:


Cryo-EM structure of gamma secretase in class 1 of the apo-state ensemble [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.567
0.505
0.489
0.463
0.455
0.428
0.426
0.405
0.388
0.351







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3238.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.048679,0.997409,0.052962 65.385965 center 0,0,0 model #1
move 107.371528,119.037066,39.289977 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!