Pairwise fitting pdb-1x18 on emdb-3125 by gmfit



Pairwise fitting of target pdb-1x18 on reference emdb-3125 by gmfit(PID:1301721).

RANK[1] Corr.Coeff:0.592 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(emdb-3125)
display:
color:
Structural basis for specific recognition of single-stranded RNA by toll-like receptor 13 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.592 0.573 0.535 0.533 0.529 0.510 0.487 0.463 0.451 0.428

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3125.map.gz", and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.595680,0.016515,0.803052 171.066596 center 0,0,0 model #1
    move 24.489102,129.312397,139.076877 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!