Pairwise fitting pdb-1x18 on emdb-3061 by gmfit



Pairwise fitting of target pdb-1x18 on reference emdb-3061 by gmfit(PID:1152411).

RANK[1] Corr.Coeff:0.589 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(emdb-3061)
display:
color:
Cryo-EM structure of the human gamma-secretase complex at 3.4 angstrom resolution. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.589 0.523 0.521 0.512 0.476 0.449 0.446 0.436 0.430 0.393

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3061.map.gz", and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.947502,-0.185394,0.260517 162.403095 center 0,0,0 model #1
    move 203.571628,172.519798,160.215843 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!