Pairwise fitting pdb-1p58 on pdb-5a1z by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-5a1z by gmfit(PID:1522726).

RANK[1] Corr.Coeff:0.732 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-5a1z)
display:
color:
b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 STRAIN PVP94-07 COMPLEXED' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.732 0.478 0.476 0.465 0.429 0.408 0.398 0.392 0.338 0.329

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5a1z"(PDB-format) or "5a1z"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.862513,-0.440466,-0.249121 127.976738 center 0,0,0 model #1
    move 5.481184,6.690860,2.917973 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!