Pairwise fitting pdb-1p58 on pdb-3j6s by gmfit










Pairwise fitting of target pdb-1p58 on reference pdb-3j6s by gmfit(PID:4065689).





RANK[1] Corr.Coeff:0.873

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(pdb-3j6s)

display:



color:


b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 AT 28 DEGREES C          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.873
0.527
0.509
0.469
0.436
0.422
0.395
0.378
0.359
0.325







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j6s"(PDB-format) or 
 "3j6s"(mmCIF-format), and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.862539,-0.443964,-0.242740 129.841835 center 0,0,0 model #1
move 2.729780,0.821559,8.957598 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!