Pairwise fitting pdb-1p58 on pdb-3j4j by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-3j4j by gmfit(PID:1249321).

RANK[1] Corr.Coeff:0.470 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-3j4j)
display:
color:
b'MODEL OF FULL-LENGTH T. THERMOPHILUS TRANSLATION INITIATION FACTOR 2 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.470 0.345 0.342 0.332 0.308 0.305 0.298 0.296 0.291 0.265

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j4j"(PDB-format) or "3j4j"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.237809,-0.737883,0.631645 160.817017 center 0,0,0 model #1
    move 145.837525,225.964602,39.118695 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!