Pairwise fitting pdb-1p58 on pdb-3j27 by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-3j27 by gmfit(PID:1383804).

RANK[1] Corr.Coeff:0.869 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-3j27)
display:
color:
b'CRYOEM STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.869 0.529 0.526 0.468 0.443 0.424 0.396 0.389 0.361 0.334

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j27"(PDB-format) or "3j27"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.862856,-0.444155,-0.241257 128.312739 center 0,0,0 model #1
    move 3.708453,5.113869,4.924008 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!