Pairwise fitting pdb-1p58 on pdb-3j05 by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-3j05 by gmfit(PID:1248848).

RANK[1] Corr.Coeff:0.768 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-3j05)
display:
color:
b'THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.768 0.764 0.460 0.430 0.416 0.397 0.383 0.368 0.344 0.337

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j05"(PDB-format) or "3j05"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.984098,-0.157384,0.082350 6.529721 center 0,0,0 model #1
    move 5.579898,24.868763,4.350139 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!