Pairwise fitting pdb-1p58 on pdb-2yn9 by gmfit










Pairwise fitting of target pdb-1p58 on reference pdb-2yn9 by gmfit(PID:1212245).





RANK[1] Corr.Coeff:0.508

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(pdb-2yn9)

display:



color:


b'CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.508
0.506
0.500
0.480
0.460
0.447
0.371
0.339
0.258
0.237







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yn9"(PDB-format) or 
 "2yn9"(mmCIF-format), and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.797909,0.063384,0.599436 145.302210 center 0,0,0 model #1
move 178.849004,-104.830172,4.147308 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!