Pairwise fitting pdb-1p58 on emdb-5488 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-5488 by gmfit(PID:3815570).





RANK[1] Corr.Coeff:0.561

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-5488)

display:



color:


Rotavirus VP6 protein [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.561
0.553
0.546
0.546
0.542
0.537
0.535
0.532
0.501
0.450







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5488.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.113556,-0.968603,-0.221162 75.880150 center 0,0,0 model #1
move 314.191053,-29.521041,244.807907 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!