Pairwise fitting pdb-1p58 on emdb-1388 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-1388 by gmfit(PID:4070914).





RANK[1] Corr.Coeff:0.474

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

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b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-1388)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.474
0.462
0.367
0.359
0.359
0.307
0.293
0.281
0.235
0.200







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1388.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.198074,0.307203,0.930802 65.499732 center 0,0,0 model #1
move -74.129100,-75.472803,-187.237830 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!