Pairwise fitting pdb-1k4r on pdb-4apw by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4apw by gmfit(PID:3553288).





RANK[1] Corr.Coeff:0.429

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4apw)

display:



color:


b'ALP12 FILAMENT STRUCTURE                                              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.429
0.382
0.372
0.369
0.367
0.365
0.358
0.275
0.271
0.268







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4apw"(PDB-format) or 
 "4apw"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.626120,-0.234187,0.743727 179.051575 center 0,0,0 model #1
move 351.081273,174.257944,102.750297 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!