Pairwise fitting pdb-1k4r on pdb-4abo by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4abo by gmfit(PID:3622090).





RANK[1] Corr.Coeff:0.522

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4abo)

display:



color:


b'MAL3 CH DOMAIN HOMOLOGY MODEL AND MAMMALIAN TUBULIN (2XRP) DOCKED INTO' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.522
0.505
0.500
0.500
0.363
0.349
0.344
0.335
0.330
0.329







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4abo"(PDB-format) or 
 "4abo"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.651578,0.468323,0.596758 109.291295 center 0,0,0 model #1
move 278.836738,-38.163213,280.345516 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!