Pairwise fitting pdb-1k4r on pdb-3j05 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3j05 by gmfit(PID:556095).





RANK[1] Corr.Coeff:0.865

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3j05)

display:



color:


b'THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.865
0.548
0.483
0.433
0.423
0.308
0.292
0.255
0.236
0.221







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j05"(PDB-format) or 
 "3j05"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.817712,0.052878,0.573194 5.550106 center 0,0,0 model #1
move -6.655018,17.496400,-8.208909 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!