Pairwise fitting pdb-1k4r on pdb-3iys by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3iys by gmfit(PID:1411792).





RANK[1] Corr.Coeff:0.499

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3iys)

display:



color:


b'HOMOLOGY MODEL OF AVIAN POLYOMAVIRUS ASYMMETRIC UNIT                  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.499
0.466
0.446
0.411
0.405
0.385
0.352
0.347
0.334
0.318







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iys"(PDB-format) or 
 "3iys"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.386095,0.904930,0.178974 146.365720 center 0,0,0 model #1
move -88.037038,25.075693,408.115649 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!