Pairwise fitting pdb-1k4r on pdb-3iyj by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-3iyj by gmfit(PID:1124078).

RANK[1] Corr.Coeff:0.481 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-3iyj)
display:
color:
b'BOVINE PAPILLOMAVIRUS TYPE 1 OUTER CAPSID ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.481 0.383 0.377 0.376 0.370 0.357 0.353 0.351 0.350 0.350

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3iyj"(PDB-format) or "3iyj"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.199395,0.200341,0.959221 95.525773 center 0,0,0 model #1
    move -81.447623,18.121615,36.268171 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!