Pairwise fitting pdb-1k4r on pdb-2yn9 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-2yn9 by gmfit(PID:4113581).





RANK[1] Corr.Coeff:0.564

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-2yn9)

display:



color:


b'CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.564
0.513
0.493
0.486
0.451
0.441
0.419
0.387
0.262
0.261







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yn9"(PDB-format) or 
 "2yn9"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.665786,-0.029923,0.745542 168.711363 center 0,0,0 model #1
move -196.479309,40.532251,-93.588277 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!