Pairwise fitting pdb-1k4r on pdb-2xkv by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-2xkv by gmfit(PID:1087243).

RANK[1] Corr.Coeff:0.515 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-2xkv)
display:
color:
b'ATOMIC MODEL OF THE SRP-FTSY EARLY CONFORMATION ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.515 0.461 0.450 0.406 0.405 0.322 0.308 0.300 0.274 0.266

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2xkv"(PDB-format) or "2xkv"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.503211,-0.371047,0.780450 159.034493 center 0,0,0 model #1
    move 527.633637,234.201227,111.319845 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!