Pairwise fitting pdb-1k4r on pdb-1ucu by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-1ucu by gmfit(PID:4061456).





RANK[1] Corr.Coeff:0.473

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-1ucu)

display:



color:


b'R-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.473
0.369
0.307
0.288
0.285
0.236
0.187
0.185
0.177
0.144







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1ucu"(PDB-format) or 
 "1ucu"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.718909,0.546045,-0.430122 80.240815 center 0,0,0 model #1
move -8.020302,186.606255,-39.168580 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!