Pairwise fitting pdb-1k4r on pdb-1thd by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-1thd by gmfit(PID:3776058).





RANK[1] Corr.Coeff:0.904

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-1thd)

display:



color:


b'COMPLEX ORGANIZATION OF DENGUE VIRUS E PROTEIN AS REVEALED BY 9.5     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.904
0.547
0.534
0.439
0.431
0.309
0.292
0.257
0.247
0.214







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1thd"(PDB-format) or 
 "1thd"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.711994,-0.110962,0.693363 3.680521 center 0,0,0 model #1
move -3.619899,10.570316,-10.097486 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!