Pairwise fitting pdb-1k4r on emdb-5810 by gmfit



Pairwise fitting of target pdb-1k4r on reference emdb-5810 by gmfit(PID:1614766).

RANK[1] Corr.Coeff:0.532 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(emdb-5810)
display:
color:
Negative-stain electron microscopy reconstruction of Tetrahymena telomerase (Teb1-f, conformation V) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.532 0.502 0.492 0.471 0.452 0.380 0.330 0.324 0.307 0.279

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5810.map.gz", and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.543037,-0.829118,-0.132941 179.942704 center 0,0,0 model #1
    move 18.444812,-15.610588,227.575568 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!