Pairwise fitting pdb-1k4r on emdb-2470 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-2470 by gmfit(PID:3992717).





RANK[1] Corr.Coeff:0.470

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-2470)

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30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4f [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.470
0.403
0.394
0.371
0.366
0.365
0.355
0.314
0.290
0.278







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2470.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.030251,-0.347507,0.937189 172.565974 center 0,0,0 model #1
move 46.379666,121.151535,-182.613933 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!