Pairwise fitting pdb-1k4r on emdb-2456 by gmfit



Pairwise fitting of target pdb-1k4r on reference emdb-2456 by gmfit(PID:1203983).

RANK[1] Corr.Coeff:0.468 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(emdb-2456)
display:
color:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4d [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.468 0.426 0.382 0.379 0.377 0.359 0.356 0.336 0.327 0.290

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2456.map.gz", and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.998816,-0.023298,-0.042706 130.545560 center 0,0,0 model #1
    move -39.079935,-192.383683,129.745270 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!