Pairwise fitting pdb-1k4r on emdb-2455 by gmfit



Pairwise fitting of target pdb-1k4r on reference emdb-2455 by gmfit(PID:1478597).

RANK[1] Corr.Coeff:0.486 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(emdb-2455)
display:
color:
30S Ribosome Subunit Assembly Intermediates, Intermediate 4c [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.486 0.441 0.430 0.427 0.411 0.374 0.337 0.332 0.306 0.305

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2455.map.gz", and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.027955,0.169609,-0.985115 179.163788 center 0,0,0 model #1
    move 14.424395,52.845559,-215.576267 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!