Pairwise fitting pdb-1k4r on emdb-2454 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-2454 by gmfit(PID:3683117).





RANK[1] Corr.Coeff:0.475

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-2454)

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30S Ribosome Subunit Assembly Intermediates, Intermediate Group 4b [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.475
0.423
0.406
0.380
0.368
0.364
0.338
0.326
0.317
0.285







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2454.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.046174,0.115713,-0.992209 177.733951 center 0,0,0 model #1
move 7.185044,31.579836,-222.473470 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!