Pairwise fitting pdb-1k4r on emdb-2215 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-2215 by gmfit(PID:3591885).





RANK[1] Corr.Coeff:0.545

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-2215)

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DOLORS: Versatile Strategy for Internal Labeling and Domain Localization in Electron Microscopy [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.545
0.494
0.438
0.436
0.433
0.422
0.419
0.401
0.351
0.241







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2215.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.853038,0.518765,0.056643 173.143852 center 0,0,0 model #1
move 74.185091,108.754000,353.156128 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!