Pairwise fitting emdb-5372 on pdb-3j6a by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3j6a by gmfit(PID:3688269).





RANK[1] Corr.Coeff:0.120

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3j6a)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.120
0.096
0.094
0.086
0.066
0.066
0.059
0.050
0.044
0.039







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j6a"(PDB-format) or 
 "3j6a"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.182705,0.692518,-0.697880 37.033310 center 0,0,0 model #1
move 90.704714,-17.821085,51.851823 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!