Pairwise fitting emdb-5372 on pdb-1upn by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-1upn by gmfit(PID:3929414).





RANK[1] Corr.Coeff:0.115

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-1upn)

display:



color:


b'COMPLEX OF ECHOVIRUS TYPE 12 WITH DOMAINS 3 AND 4 OF ITS RECEPTOR     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.115
0.048
0.026
0.017
0.017
0.012
0.012
0.010
0.010
0.007







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1upn"(PDB-format) or 
 "1upn"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.652684,-0.691576,0.309398 157.458185 center 0,0,0 model #1
move -63.655467,78.091390,113.680508 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!