Pairwise fitting emdb-5372 on pdb-1jew by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-1jew by gmfit(PID:560565).





RANK[1] Corr.Coeff:0.108

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-1jew)

display:



color:


b'CRYO-EM STRUCTURE OF COXSACKIEVIRUS B3(M STRAIN) WITH ITS CELLULAR    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.108
0.048
0.047
0.045
0.021
0.019
0.019
0.017
0.016
0.013







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1jew"(PDB-format) or 
 "1jew"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.053305,-0.770220,-0.635547 65.324629 center 0,0,0 model #1
move -46.122456,83.307193,84.819658 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!