Pairwise fitting emdb-5168 on pdb-3j2d by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-3j2d by gmfit(PID:3702000).





RANK[1] Corr.Coeff:0.526

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-3j2d)

display:



color:


b'DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.526
0.520
0.455
0.448
0.433
0.429
0.427
0.423
0.300
0.298







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2d"(PDB-format) or 
 "3j2d"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.671378,0.222963,-0.706781 132.875729 center 0,0,0 model #1
move -13.406233,-8.160325,-2.297479 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!