Pairwise fitting emdb-5168 on pdb-2yn9 by gmfit



Pairwise fitting of target emdb-5168 on reference pdb-2yn9 by gmfit(PID:1135348).

RANK[1] Corr.Coeff:0.532 [JSmol] [Molmil]
TARGET(emdb-5168)
display:
color:
Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5168)]
REFERENCE(pdb-2yn9)
display:
color:
b'CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.532 0.518 0.489 0.487 0.470 0.461 0.451 0.448 0.256 0.237

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2yn9"(PDB-format) or "2yn9"(mmCIF-format), and read it.
  2. Download the Target map "emd_5168.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.302178,-0.460480,0.834654 41.925993 center 0,0,0 model #1
    move 28.073608,31.539578,-44.010174 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!