Pairwise fitting emdb-5168 on pdb-2w4t by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-2w4t by gmfit(PID:3976786).





RANK[1] Corr.Coeff:0.484

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-2w4t)

display:



color:


b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.484
0.434
0.422
0.411
0.393
0.391
0.388
0.374
0.245
0.236







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2w4t"(PDB-format) or 
 "2w4t"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.706103,-0.227420,-0.670596 105.482795 center 0,0,0 model #1
move -88.490395,1.773466,28.821106 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!