Pairwise fitting emdb-5168 on pdb-2iy3 by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-2iy3 by gmfit(PID:534892).





RANK[1] Corr.Coeff:0.419

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-2iy3)

display:



color:


b'STRUCTURE OF THE E. COLI SIGNAL REGOGNITION PARTICLE                  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.419
0.362
0.345
0.339
0.335
0.306
0.296
0.284
0.212
0.204







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2iy3"(PDB-format) or 
 "2iy3"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.646168,-0.762112,-0.040655 170.471541 center 0,0,0 model #1
move 329.216869,220.137995,192.541124 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!