Pairwise fitting emdb-5168 on pdb-1thd by gmfit



Pairwise fitting of target emdb-5168 on reference pdb-1thd by gmfit(PID:1651104).

RANK[1] Corr.Coeff:0.493 [JSmol] [Molmil]
TARGET(emdb-5168)
display:
color:
Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5168)]
REFERENCE(pdb-1thd)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS E PROTEIN AS REVEALED BY 9.5 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.493 0.447 0.428 0.427 0.381 0.378 0.354 0.345 0.274 0.261

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1thd"(PDB-format) or "1thd"(mmCIF-format), and read it.
  2. Download the Target map "emd_5168.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.656107,0.244134,0.714089 172.144327 center 0,0,0 model #1
    move 23.734741,-25.032641,215.490428 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!