Pairwise fitting emdb-5111 on pdb-5foj by gmfit



Pairwise fitting of target emdb-5111 on reference pdb-5foj by gmfit(PID:1171155).

RANK[1] Corr.Coeff:0.112 [JSmol] [Molmil]
TARGET(emdb-5111)
display:
color:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5111)]
REFERENCE(pdb-5foj)
display:
color:
b'CRYO ELECTRON MICROSCOPY STRUCTURE OF GRAPEVINE FANLEAF VIRUS COMPLEX ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.112 0.084 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.000

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5foj"(PDB-format) or "5foj"(mmCIF-format), and read it.
  2. Download the Target map "emd_5111.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.199666,0.907154,0.370412 168.228644 center 0,0,0 model #1
    move 202.062901,56.346279,143.222480 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!