Pairwise fitting emdb-5111 on pdb-3jbd by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-3jbd by gmfit(PID:1561609).





RANK[1] Corr.Coeff:0.136

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-3jbd)

display:



color:


b'COMPLEX OF POLIOVIRUS WITH VHH PVSP6A                                 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.136
0.051
0.047
0.032
0.003
0.001
0.001
0.001
0.001
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jbd"(PDB-format) or 
 "3jbd"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.901836,-0.162406,0.400394 128.167024 center 0,0,0 model #1
move 89.553885,0.112091,50.545390 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!