Pairwise fitting emdb-5111 on pdb-1m11 by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-1m11 by gmfit(PID:1333961).





RANK[1] Corr.Coeff:0.021

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-1m11)

display:



color:


b'STRUCTURAL MODEL OF HUMAN DECAY-ACCELERATING FACTOR BOUND TO ECHOVIRUS' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.021
0.008
0.005
0.004
0.004
0.004
0.003
0.003
0.003
0.003







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1m11"(PDB-format) or 
 "1m11"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.377497,-0.263386,-0.887764 88.306033 center 0,0,0 model #1
move 28.901406,44.259000,112.297280 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!