Pairwise fitting emdb-5111 on pdb-1d3i by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-1d3i by gmfit(PID:4031235).





RANK[1] Corr.Coeff:0.132

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-1d3i)

display:



color:


b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.132
0.128
0.126
0.117
0.114
0.087
0.082
0.075
0.035
0.035







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1d3i"(PDB-format) or 
 "1d3i"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.372854,-0.579828,-0.724416 98.996521 center 0,0,0 model #1
move 46.205014,27.254421,22.855944 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!