Pairwise fitting emdb-5111 on pdb-1d3e by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-1d3e by gmfit(PID:3164727).





RANK[1] Corr.Coeff:0.138

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-1d3e)

display:



color:


b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.138
0.123
0.122
0.117
0.117
0.115
0.114
0.113
0.110
0.075







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1d3e"(PDB-format) or 
 "1d3e"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.963544,-0.257921,-0.071124 160.552421 center 0,0,0 model #1
move 39.027476,9.831413,17.104661 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!