Pairwise fitting emdb-5111 on emdb-1049 by gmfit



Pairwise fitting of target emdb-5111 on reference emdb-1049 by gmfit(PID:1134269).

RANK[1] Corr.Coeff:0.638 [JSmol] [Molmil]
TARGET(emdb-5111)
display:
color:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5111)]
REFERENCE(emdb-1049)
display:
color:
A cellular receptor of human rhinovirus type 2, the very-low-density lipoprotein receptor, binds to two neighboring proteins of the viral capsid. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.638 0.623 0.617 0.612 0.611 0.609 0.609 0.608 0.608 0.606

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1049.map.gz", and read it.
  2. Download the Target map "emd_5111.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.829162,0.557491,-0.041156 141.726274 center 0,0,0 model #1
    move 1.852743,0.213973,2.514871 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!