Pairwise fitting emdb-5034 on pdb-5l9t by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5l9t by gmfit(PID:3920030).





RANK[1] Corr.Coeff:0.423

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5l9t)

display:



color:


b'MODEL OF HUMAN ANAPHASE-PROMOTING COMPLEX/CYCLOSOME (APC/C-CDH1) WITH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.423
0.405
0.391
0.390
0.379
0.378
0.375
0.371
0.366
0.361







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5l9t"(PDB-format) or 
 "5l9t"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.790206,0.347008,-0.505134 129.460566 center 0,0,0 model #1
move -24.432864,367.683983,330.794556 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!