Pairwise fitting emdb-5034 on pdb-5a31 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5a31 by gmfit(PID:4113651).





RANK[1] Corr.Coeff:0.417

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5a31)

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color:


b'STRUCTURE OF THE HUMAN APC-CDH1-HSL1-UBCH10 COMPLEX.                  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.417
0.411
0.406
0.403
0.402
0.400
0.398
0.388
0.307
0.306







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5a31"(PDB-format) or 
 "5a31"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.993561,-0.109392,0.029480 98.193463 center 0,0,0 model #1
move 12.792969,3.064032,362.063022 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!