Pairwise fitting emdb-5034 on pdb-4v2t by gmfit



Pairwise fitting of target emdb-5034 on reference pdb-4v2t by gmfit(PID:1556462).

RANK[1] Corr.Coeff:0.431 [JSmol] [Molmil]
TARGET(emdb-5034)
display:
color:
Structure of a type IV secretion system core complex [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5034)]
REFERENCE(pdb-4v2t)
display:
color:
b'MEMBRANE EMBEDDED PLEUROTOLYSIN PORE WITH 13 FOLD SYMMETRY ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.431 0.419 0.405 0.388 0.306 0.303 0.296 0.294 0.264 0.255

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v2t"(PDB-format) or "4v2t"(mmCIF-format), and read it.
  2. Download the Target map "emd_5034.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.000775,0.023509,0.999723 127.207977 center 0,0,0 model #1
    move 443.177333,158.406886,-4.634123 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!