Pairwise fitting emdb-5034 on pdb-4adx by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-4adx by gmfit(PID:4014383).





RANK[1] Corr.Coeff:0.493

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-4adx)

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b'THE CRYO-EM STRUCTURE OF THE ARCHAEAL 50S RIBOSOMAL SUBUNIT IN COMPLEX' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.493
0.481
0.471
0.470
0.469
0.467
0.464
0.463
0.376
0.371







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4adx"(PDB-format) or 
 "4adx"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.798130,-0.378974,-0.468367 102.406962 center 0,0,0 model #1
move -97.524094,2.666093,101.798063 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!