Pairwise fitting emdb-5034 on pdb-3j2w by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3j2w by gmfit(PID:3971225).





RANK[1] Corr.Coeff:0.340

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3j2w)

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b'ELECTRON CRYO-MICROSCOPY OF CHIKUNGUNYA VIRUS                         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.340
0.326
0.304
0.301
0.298
0.297
0.295
0.284
0.281
0.261







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2w"(PDB-format) or 
 "3j2w"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.524833,0.818316,0.234326 126.020169 center 0,0,0 model #1
move 160.479127,-71.308453,513.046767 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!